Xinglab/rmats-turbo

A toolset for profiling alternative splicing events in RNA-Seq data.

A rust implementation of STAR

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Full-Length Alternative Isoform analysis of RNA

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

Analyze your RNA sequencing data without writing a single line of code

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.