opencobra/cobrapy

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

A Collection Of The State-of-the-art Metaheuristic Algorithms In Python (Metaheuristic/Optimizer/Nature-inspired/Biology)

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

A comprehensive library for computational molecular biology

Official git repository for Biopython (originally converted from CVS)

Brain Dynamics Programming in Python

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Python package for Causal Discovery by learning the graphical structure of Bayesian networks. Structure Learning, Parameter Learning, Inferences, Sampling methods.

State is a machine learning model that predicts cellular perturbation response across diverse contexts