ksahlin/strobealign

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Successor of bwa-mem for short-read alignment

A fast and sensitive gapped read aligner

Graph-based alignment (Hierarchical Graph FM index)

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

SPAdes Genome Assembler

Accelerated BLAST compatible local sequence aligner.

Oxford Nanopore's Basecaller

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment