Footer

Your go-to destination for discovering trending open-source projects and uncovering the insights that matter

Legal

  • Terms and conditions
  • Privacy policy

More

  • Pricing
  • Advertise
  • onedump
  • gosnakego
  • Contact us

Social

  • X (Twitter)
  • GitHub
Trendshift owl
What they build speaks louder than words
© 2026 Trendshift, created by Julian Li with ❤️
SignalAdvertise
Trendshift
SignalAdvertise
Sign in
Trendshift owl

Discover trends that matter

DailyWeeklyMonthlyYearly
Live mentionsTopics
RepositoriesDevelopers
InsightsStats
Busbar
Busbar
AxiomCode
AxiomCode
Bifrost
Bifrost

labsyspharm/mcmicro

Multiple-choice microscopy pipeline

Visit GitHub
Nextflow
156
64
19 contributors
MIT License
website
AchievementsView all →
FeaturedAdvertise to 180K+ monthly visitors
Busbar

Control what AI can do before it acts

AxiomCode

Give Al Agents a Deeper Understanding of Your Codebase with a Code Graph

Bifrost

Enterprise AI Gateway Built For Scale: Route, Govern, and Secure All Your AI Traffic

Momentum

How fast labsyspharm/mcmicro is gaining stars, and where it lands on Trendshift and GitHub Trending

Activity and trending

Stars, forks and merged pull requests each day or month, lined up with the repository's rank on Trendshift Trending

Sep 2 – Oct 20, 2026

Stars +0 in 49 days

01

Forks +1 in 49 days

01
1

Merged PRs 0 in 49 days

01

Trendshift Trendingwhere the repository ranked each day it made the top 25

Top 25 in Nextflow

12211
Sep 2Sep 9Sep 16Sep 23Sep 30Oct 7Oct 14
The left and right arrow keys step from day to day; Home and End go to the first and the last

Stars, forks, merged pull requests and Trendshift Trending rank, by day
DayStars gainedForks gainedMerged PRsNextflow
Wed, Sep 2, 2026+0+00#12
Thu, Sep 3, 2026+0+00Not trending
Fri, Sep 4, 2026+0+00Not trending
Sat, Sep 5, 2026+0+00Not trending
Sun, Sep 6, 2026+0+00Not trending
Mon, Sep 7, 2026+0+00Not trending
Tue, Sep 8, 2026+0+10#2
Wed, Sep 9, 2026+0+00Not trending
Thu, Sep 10, 2026+0+00Not trending
Fri, Sep 11, 2026+0+00Not trending
Sat, Sep 12, 2026+0+00Not trending
Sun, Sep 13, 2026+0+00Not trending
Mon, Sep 14, 2026+0+00Not trending
Tue, Sep 15, 2026+0+00Not trending
Wed, Sep 16, 2026+0+00Not trending
Thu, Sep 17, 2026+0+00Not trending
Fri, Sep 18, 2026+0+00Not trending
Sat, Sep 19, 2026+0+00Not trending
Sun, Sep 20, 2026+0+00Not trending
Mon, Sep 21, 2026+0+00Not trending
Tue, Sep 22, 2026+0+00Not trending
Wed, Sep 23, 2026+0+00Not trending
Thu, Sep 24, 2026+0+00Not trending
Fri, Sep 25, 2026+0+00Not trending
Sat, Sep 26, 2026+0+00Not trending
Sun, Sep 27, 2026+0+00Not trending
Mon, Sep 28, 2026+0+00Not trending
Tue, Sep 29, 2026+0+00Not trending
Wed, Sep 30, 2026+0+00Not trending
Thu, Oct 1, 2026+0+00Not trending
Fri, Oct 2, 2026+0+00Not trending
Sat, Oct 3, 2026+0+00Not trending
Sun, Oct 4, 2026+0+00Not trending
Mon, Oct 5, 2026+0+00Not trending
Tue, Oct 6, 2026+0+00Not trending
Wed, Oct 7, 2026+0+00Not trending
Thu, Oct 8, 2026+0+00Not trending
Fri, Oct 9, 2026+0+00Not trending
Sat, Oct 10, 2026+0+00Not trending
Sun, Oct 11, 2026+0+00Not trending
Mon, Oct 12, 2026+0+00Not trending
Tue, Oct 13, 2026+0+00Not trending
Wed, Oct 14, 2026+0+00Not trending
Thu, Oct 15, 2026+0+00Not trending
Fri, Oct 16, 2026+0+00#11
Sat, Oct 17, 2026+0+00Not trending
Sun, Oct 18, 2026+0+00Not trending
Mon, Oct 19, 2026+0+00Not trending
Tue, Oct 20, 2026+0+00Not trending
Total+0+10
  • 1#1 on the list
  • 7Rank that day
  • Not trending

    • Achievements

    Trendshift snapshots GitHub's daily Trending list and runs its own trending list

    Trendshift Trending

    labsyspharm/mcmicro has trended on Trendshift's daily and weekly list

    Daily

    First achieved on 8th, Sep 2026 for Nextflow

    #2 Nextflow Repository Of The Day

    Weekly

    First achieved in Week 37, 2026 for Nextflow

    #14 Nextflow Repository Of The Week

    First achieved on 8th, Sep 2026 for Nextflow

    #2 Nextflow Repository Of The Day

    First achieved in Week 37, 2026 for Nextflow

    #14 Nextflow Repository Of The Week

    You might also like

    Repositories close to labsyspharm/mcmicro
    FeaturedAdvertise to 180K+ monthly visitors
    Bifrost

    Enterprise AI Gateway Built For Scale: Route, Govern, and Secure All Your AI Traffic

    Busbar

    Control what AI can do before it acts

    AxiomCode

    Give Al Agents a Deeper Understanding of Your Codebase with a Code Graph

    mahmoodlab/TRIDENT

    Python

    Toolkit for large-scale whole-slide image processing.

    646144

    oncologylab/histopia

    Python

    Histology Spatial Topology for Omics Profiling and Inter-section Alignment

    7836

    qupath/qupath

    Java

    QuPath - Open-source bioimage analysis for research

    1.5k344

    Dana-Farber-AIOS/pathml

    Python

    Tools for computational pathology

    46786

    nadeemlab/DeepLIIF

    Python

    Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24, MICCAI'26]

    26493

    instanseg/instanseg

    Python

    InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.

    24838

    bunnelab/virtues

    Jupyter Notebook

    A foundation model framework for analyzing multiplexed tissue imaging data across molecular, cellular and tissue scales enabling clinical diagnostics, biological discovery and patient case retrieval.

    16020

    computational-cell-analytics/micro-sam

    Jupyter Notebook

    Segment Anything for Microscopy

    739113

    DigitalSlideArchive/HistomicsTK

    Python

    A Python toolkit for pathology image analysis algorithms.

    491123