gavinha/TitanCNA

Analysis pipeline for cancer sequencing data

Copy number calling and variant classification using targeted short read sequencing

Copy number variant detection from targeted DNA sequencing

Personal Cancer Genome Reporter (PCGR)

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

Various algorithms for analysing genomics data

An ensemble approach to accurately detect somatic mutations using SomaticSeq

dN/dS methods to quantify selection in cancer and somatic evolution

A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArchitect, and invokes AmpliconClassifier