macs3-project/MACS

ChIP-seq analysis notes from Ming Tang

Gene Set Enrichment Analysis in Python

Tools to process and analyze deep sequencing data.

Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports

Copy number variant detection from targeted DNA sequencing

📊 A universal enrichment tool for interpreting omics data

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive update to it.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.