varlociraptor/varlociraptor

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

Joint structural variant and copy number variant caller for HiFi sequencing data

A structural variation pipeline for short-read sequencing

An ensemble approach to accurately detect somatic mutations using SomaticSeq