pyranges/pyranges0

🧬 gget enables efficient querying of genomic reference databases

Cloud-native genomic dataframes and batch computing

python module to plot beautiful and highly customizable genome browser tracks

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

Efficient pythonic random access to fasta subsequences

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Python library to facilitate genome assembly, annotation, and comparative genomics