satijalab/seurat-wrappers

R toolkit for single cell genomics

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.

R package for integrating and analyzing multiple single-cell datasets

An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.

Single-cell analysis in Python. Scales to >100M cells.

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

A toolkit for single-cell immune profiling

Deep probabilistic analysis of single-cell and spatial omics data

RNA Velocity generalized through dynamical modeling