scikit-tda/ripser.py

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

TTK - Topological Data Analysis and Visualization - Source Code

🔴 MiniSom is a minimalistic implementation of the Self Organizing Maps

Topological Deep Learning

pca: A Python Package for Principal Component Analysis.

TriMap: Large-scale Dimensionality Reduction Using Triplets

Extensible, parallel implementations of t-SNE

Spatial Single Cell Analysis in Python

Uniform Manifold Approximation and Projection