CharlesHahn/DuIvy

A simple and fast python library to handle the data generated from molecular dynamics simulations

OpenMM tutorial for the course "Foundations and Applications of Molecular Dynamics"

The OpenMM Cookbook and Tutorials

MDAnalysis is a Python library to analyze molecular dynamics simulations.

MDANCE: Hyper-efficient tools to process molecular dynamics simulations.

Visual Interactive Analysis of Molecular Dynamics

List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning

Interaction Fingerprints for protein-ligand complexes and more

Real time molecular dynamics in the browser using LAMMPS