apcamargo/genomad

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

Versatile open-source tool for microbiome analysis

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

Fast Whole-Genome Similarity (ANI) Estimation

Quickly search, compare, and analyze genomic and metagenomic data sets.