Histology Spatial Topology for Omics Profiling and Inter-section Alignment
Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many other features.
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
A novel machine learning pipeline to analyse spatial transcriptomics data
List of Spatial Transcriptomics related Tools organized per category
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
Code for the spatialLIBD R/Bioconductor package and shiny app
