Genentech/decima

Metacells - Single-cell RNA Sequencing Analysis

UCE is a zero-shot foundation model for single-cell gene expression data

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Deep probabilistic analysis of single-cell and spatial omics data

Unsupervised Deep Disentangled Representation of Single-Cell Omics

Biological sequence analysis for the modern age.

BulkFormer: A large-scale foundation model for human bulk transcriptomes

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.