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nataliegits/Benchmate — GitHub trending stats & insights | Trendshift

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nataliegits/Benchmate

LangGraph-based Co-Scientist starter for biomedical hypothesis generation: 7 agents, Elo tournament, PubMed search.

Jupyter Notebook

2 contributors

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Recent discussions about this repository across the web

Then, I cross-checked it against AlphaGenome from @GoogleDeepMind (predicts regulatory effect from DNA). Curiously...on 6 GTEx variants the judge and the sequence model actually disagreed (Spearman…

@natalie_y_chen · x.com

First, I wired in OntoMCP, which resolves "HRD1" → a canonical Gene Ontology ID with no hallucinated identifiers, and fed that grounding to 5 of the 7 agents.

@natalie_y_chen · x.com

agents read from PubMed or Geneformer data to make hypotheses, but the judging agent doesn't! And it scores mostly on how a hypothesis reads, not whether it's true. So I'm now thinking about how to…

@natalie_y_chen · x.com

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