YosefLab/popV

Clone of the Bioconductor repository for the SingleR package.

CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework

Cell type annotation for single-cell RNA-seq using multi-LLM consensus

Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs

Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

Metacells - Single-cell RNA Sequencing Analysis

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing