imgag/ngs-bits

Tools for working with genomic and high throughput sequencing data.

Tools to process and analyze deep sequencing data.

A quality control analysis tool for high throughput sequencing data

A *fast* tool for BAM/CRAM quality evaluation, intended for long reads

Tools (written in C using htslib) for manipulating next-generation sequencing data

Ultra-fast preprocessing and quality control for long-read sequencing data

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

viral-ngs: command line tools and wrappers for processing raw viral genomic data

Oxford Nanopore's Basecaller