fulcrumgenomics/fgbio

Tools for handling Unique Molecular Identifiers in NGS data sets

Tools to process and analyze deep sequencing data.

Tools (written in C using htslib) for manipulating next-generation sequencing data

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Official code repository for GATK versions 4 and up

Python library to facilitate genome assembly, annotation, and comparative genomics

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

A quality control analysis tool for high throughput sequencing data

An open-source toolkit for large-scale genomic analysis