KolmogorovLab/Wakhan

Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

Long read based human genomic structural variation detection with cuteSV

Structural variation caller using third generation sequencing

Copy number calling and variant classification using targeted short read sequencing

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Inference of ploidy and heterozygosity structure using whole genome sequencing data