brentp/somalier

Tools for working with genomic and high throughput sequencing data.

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive update to it.

Reusable genomic evidence for research and analysis tools: exact read evidence, portable datasets, and managed analyzers.

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Inference of ploidy and heterozygosity structure using whole genome sequencing data

Tools to process and analyze deep sequencing data.

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

A quality control analysis tool for high throughput sequencing data

A structural variation pipeline for short-read sequencing