calico/baskerville-tf

Research code accompanying AlphaGenome

One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English analysis through MCP.

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Biological sequence analysis for the modern age.

Foundation Models for Genomics & Transcriptomics

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

RNA-seq prediction with deep convolutional neural networks.

Build foundation model for RNA or DNA data