pinellolab/chorus

Research code accompanying AlphaGenome

Foundation Models for Genomics & Transcriptomics

🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species

RNA-seq prediction with deep convolutional neural networks.

Machine learning methods for DNA sequence analysis.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A modular annotation tool for genomic variants

MarinDNA - open development of genomic language models

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)