thelovelab/tximport

Brings bulk and pseudobulk transcriptomics to the tidyverse

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Analyze your RNA sequencing data without writing a single line of code

Reference-guided transcript discovery and quantification for long read RNA-Seq data

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

Gene set variation analysis