GoekeLab/bambu

Full-Length Alternative Isoform analysis of RNA

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

Plotting scripts for long read sequencing data

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling

A single molecule sequence assembler for genomes large and small.

Structural variation caller using third generation sequencing

Long read based human genomic structural variation detection with cuteSV