usadellab/Helixer

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Eukaryotic Genome Annotation Pipeline

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Extensive de-novo TE Annotator

Research code accompanying AlphaGenome

Biological sequence analysis for the modern age.

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants