nf-core/crisprseq

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Analysis pipelines for genomic sequencing data

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

All source code of the crispor.org website

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

A comprehensive cancer DNA/RNA analysis and reporting pipeline

ChIP-seq peak-calling, QC and differential analysis pipeline.

A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArchitect, and invokes AmpliconClassifier

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data