nf-core/variantbenchmarking

A tool for sniffing out the differences in vari-Ants

Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

A structural variation pipeline for short-read sequencing