Efficient genotyping bi-allelic SNPs on single cells
Like single-cell-genetics/cellsnp-lite, 0 likes 0 Bookmark single-cell-genetics/cellsnp-lite, 0 bookmarks 0 10x Genomics Single Cell Analysis
Like 10XGenomics/cellranger, 0 likes 0 Bookmark 10XGenomics/cellranger, 0 bookmarks 0 Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
Like varlociraptor/varlociraptor, 0 likes 0 Bookmark varlociraptor/varlociraptor, 0 bookmarks 0 DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Like google/deepvariant, 0 likes 0 Bookmark google/deepvariant, 0 bookmarks 0 Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Like freebayes/freebayes, 0 likes 0 Bookmark freebayes/freebayes, 0 bookmarks 0 SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
Like dpeerlab/SEACells, 0 likes 0 Bookmark dpeerlab/SEACells, 0 bookmarks 0 T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
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Like dellytools/delly, 0 likes 0 Bookmark dellytools/delly, 0 bookmarks 0 This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
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