softnanolab/bagel

composite-objective protein design

Template-based protein design with Raygun

Official repository for the ProteinDJ protein design pipeline

Sandbox for Deep-Learning based Computational Protein Design

The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics

A generative model for programmable protein design

HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structures by leveraging the forward pass of a structure prediction model

Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry

All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN