ablab/IsoQuant

Full-Length Alternative Isoform analysis of RNA

Reference-guided transcript discovery and quantification for long read RNA-Seq data

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Plotting scripts for long read sequencing data

SPAdes Genome Assembler

Identification of differential RNA modifications from nanopore direct RNA sequencing

Oxford Nanopore's Basecaller

Nanopore demultiplexing, QC and alignment pipeline

A package for including transposable elements in differential enrichment analysis of sequencing datasets.