nf-core/isoseq

A universal toolkit for upstream processing of long RNA reads

Full-Length Alternative Isoform analysis of RNA

De novo clustering of long transcript reads into genes

Long-read splice alignment with high accuracy

Long read production pipelines

long read RNA-seq quantification

Tool for the Quality Control of Long-Read Defined Transcriptomes

Reference-free clustering and consensus forming of long-read amplicon sequencing

Reference-guided transcript discovery and quantification for long read RNA-Seq data