Clinical-Genomics/chanjo

Tools to process and analyze deep sequencing data.

Copy number variant detection from targeted DNA sequencing

A collection of command line tools for working with sequencing data

Tools for working with genomic and high throughput sequencing data.

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Software for predicting library complexity and genome coverage in high-throughput sequencing.

Reusable genomic evidence for research and analysis tools: exact read evidence, portable datasets, and managed analyzers.

Analysis pipelines for genomic sequencing data

Short-read and long-read sequencing tools for diagnostics