nf-core/smrnaseq

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs

A proof of concept of RNAseq pipeline

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Analyze your RNA sequencing data without writing a single line of code

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Nanopore demultiplexing, QC and alignment pipeline

RNA-seq analysis pipeline for detection of gene-fusions

Analysis pipelines for genomic sequencing data