nextflow-io/rnaseq-nf

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

A small-RNA sequencing analysis pipeline

Analyze your RNA sequencing data without writing a single line of code

gatk4 RNA variant calling pipeline

RNA-seq analysis pipeline for detection of gene-fusions

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment