RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
RNA-seq workflow using STAR and DESeq2
Analyze your RNA sequencing data without writing a single line of code
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
Customizable workflows based on snakemake and python for the analysis of NGS data
A continually expanding collection of RNA-seq tools
Fast genomics quality control tools for sequencing data, written in Rust.
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
