snakemake-workflows/rna-seq-kallisto-sleuth

RNA-seq workflow using STAR and DESeq2

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Analyze your RNA sequencing data without writing a single line of code

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.